Rebecca Bluegarden visits the nearly deserted Granbell Kingdom. There she meets the sole human inhabitant, Shiki, who wants to be her friend.

On their way to Blue Garden, Rebecca encourages Shiki to get his adventure license. She also asks him to be a bodyguard for her and Happy.

Shiki loses his cool when famous B-Cuber Labilia makes fun of Rebecca’s inferior B-Cube channel. Then, Shiki gets his official adventure license.

On the planet Norma, where time is 50 years in the past, Happy and Rebecca meet a young Professor Weisz, who long ago saved Happy’s life.

Shiki and the gang break into Sibir’s hideout to get Pino back, but Weisz takes advantage of the chaos to try and take Pino for himself.

While Shiki and the gang struggle to fly Aqua Wing off of Norma, Weisz suddenly appears and offers to help — but he wants something in return.

After boarding the pirate ship Skull Fairy, Shiki makes his way to the bridge to confront Elsie Crimson and fight her for the vessel.

Witch informs Shiki that he is now the master of the Edens Zero. She further explains that the ship has not yet returned to its full power.

While Shiki and the others rush to rescue Rebecca, Weisz returns to Edens Zero along with a woman named Homura.

Homura uses her Soul Blade powers to fight off Sister's men. Meanwhile, Rebecca plans her escape from Illega Tower.

As the chronophage moves ever closer to Planet Guilst, Shiki is disgusted to see Sister use Jinn as a shield. Then, another Sister appears!

Witch and Sister Ivry finally reunite, and Homura reveals her true motivations for coming aboard Edens Zero.

After finding Hermit on Iron Hill, the crew deduces that she’s in an abnormal sleep mode as a result of her heart being broken.

The crew enters the virtual planet of Digitalis to search for Hermit, but when they find her, she stubbornly refuses to return to Edens Zero.

After Homura declares that she’s joining Drakken Joe, Shiki and the crew are shocked when another Homura suddenly appears.

Spider hacks into Edens Zero’s system and starts to destroy the ship from the inside. The only one who can stop him is Hermit.

To find the fourth member of the Demon King’s Four Shining Stars, Shiki and the crew head for the Planet of Time, Mildian.

At Battle Coliseum, Xiaomei tells Shiki and the crew that she’ll give them the information they want — but only if they can defeat their opponents.

After obtaining the information they needed from Xiaomei, Edens Zero sets course for the planet of Sun Jewel to reunite Homura with her mentor.

Shiki and Homura find themselves in a labor zone where they’re forced to gather valuable metal for a figure known as Madame Kurenai.

Nino leads Rebecca, Pino and Happy to the labor zone where they meet a man named Paul, who tells them he’s Valkyrie’s disciple.

When Homura was a child on a war-torn planet, Valkyrie took her under her wing and raised her like her own.

Shiki and the others confront Madame Kurenai. Homura is overwhelmed with sadness when she sees Valkyrie, while Drakken Joe hacks into Oculus Kurenai.

Baku is easily defeated, thanks to Weisz’s Arsenal suit. While Shiki battles the Knight Gear controlled by Madame Kurenai, Rebecca fights Nino.

After the battle between the Kurenai Dragoon and Shiki comes to an end, Shiki and the others return to the Edens Zero and have to share some bad news.